Publications

HAL (publication archive)

C. Liautard-Haag, G. Durif, C. VanGoethem, D. Baux, A. Louis, L. Cayrefourcq, M. Lamairia, M. Willems, C. Zordan, V. Dorian, C. Rooryck, C. Goizet, A. Chaussenot, L. Monteil, P. Calvas, C. Miry, R. Favre, E. Le Boette, M. Fradin, A. F. Roux, M. Cossée, M. Koenig, C. Alix-Panabière, C. Guissart, M. C. Vincent (2022). Noninvasive prenatal diagnosis of genetic diseases induced by triplet repeat expansion by linked read haplotyping and Bayesian approach. Scientific Reports.

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Thomas Moreau, Mathurin Massias, Alexandre Gramfort, Pierre Ablin, Pierre-Antoine Bannier, Benjamin Charlier, Mathieu Dagréou, Tom Dupré la Tour, Ghislain Durif, Cassio F. Dantas, Quentin Klopfenstein, Johan Larsson, En Lai, Tanguy Lefort, Benoit Malézieux, Badr Moufad, Binh T. Nguyen, Alain Rakotomamonjy, Zaccharie Ramzi, Joseph Salmon, Samuel Vaiter (2022). Benchopt: Reproducible, efficient and collaborative optimization benchmarks. arXiv.

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Zaineb Smida, Lionel Cucala, Ali Gannoun, Ghislain Durif (2022). A median test for functional data. Journal of Nonparametric Statistics.

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Zaineb Smida, Lionel Cucala, Ali Gannoun, Ghislain Durif (2022). A Wilcoxon-Mann-Whitney spatial scan statistic for functional data. Computational Statistics & Data Analysis.

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Clémentine Decamps, Alexis Arnaud, Florent Petitprez, Mira Ayadi, Aurélia Baurès, Lucile Armenoult, Hadaca Consortium, Sergio Escalera, Isabelle Guyon, Rémy Nicolle, Richard Tomasini, Aurélien de Reyniès, Jérôme Cros, Yuna Blum, Magali Richard (2021). DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification. BMC Bioinformatics.

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Jeff E. Mold, Laurent Modolo, Joanna Hård, Margherita Zamboni, Anton J. M. Larsson, Moa Stenudd, Carl-Johan Eriksson, Ghislain Durif, Patrik L. Ståhl, Erik Borgström, Simone Picelli, Björn Reinius, Rickard Sandberg, Pedro Réu, Carlos Talavera-Lopez, Björn Andersson, Kim Blom, Johan K. Sandberg, Franck Picard, Jakob Michaelsson, Jonas Frisén (2021). Divergent clonal differentiation trajectories establish CD8+ memory T~cell heterogeneity during acute viral infections in humans. Cell Reports.

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François-David Collin, Ghislain Durif, Louis Raynal, Eric Lombaert, Mathieu Gautier, Renaud Vitalis, Jean-Michel Marin, Arnaud Estoup (2021). Extending approximate Bayesian computation with supervised machine learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest. Molecular Ecology Resources.

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Benjamin Charlier, Jean Feydy, Joan Alexis Glaunès, François-David Collin, Ghislain Durif (2021). Kernel Operations on the GPU, with Autodiff, without Memory Overflows. Journal of Machine Learning Research.

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Clémentine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, Hadaca Consortium, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer, Michael Blum, Magali Richard (2020). Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. BMC Bioinformatics.

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Ghislain Durif, Laurent Modolo, Jeff E. Mold, Sophie Lambert-Lacroix, Franck Picard (2019). Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis. Bioinformatics.

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Ghislain Durif, Laurent Modolo, Jeff E. Mold, Sophie Lambert-Lacroix, Franck Picard (2018). Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis. RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology.

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Ghislain Durif, Laurent Modolo, Jakob Michaelsson, Jeff E. Mold, Sophie Lambert-Lacroix, Franck Picard (2018). High dimensional classification with combined adaptive sparse PLS and logistic regression. Bioinformatics.

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Ghislain Durif (2016). Multivariate analysis of high-throughput sequencing data.

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